The Fallacy of Complexity

Posted on April 18, 2017 by Doug Marman

By Doug Marman

Even the simplest organisms are amazingly complicated. This is why scientists who focus on the origin of life often study complexity. They try to find ways that intricate patterns can emerge from simple algorithms. They hope that this will give us clues on how cellular life evolved. This is a fallacy.

The mistake comes from confusing complexity, in general, with the specific kind of intricacies we find in living things. There is so much vague thinking about this subject that many scientists think that generating any kind of complexity can help solve the mystery of life. Countless hours have been wasted on this pursuit.

Professor Sharon Glotzer talks with some engineering students. Photo from University of Michigan.

A recent article raises this issue again. “A ‘Digital Alchemist’ Unravels the Mysteries of Complexity” describes the fascinating work of Sharon Glotzer and her 33-person team, at the University of Michigan.

Glotzer uses computer simulations to study emergence — the phenomenon whereby simple objects give rise to surprising collective behaviors. “When flocks of starlings make these incredible patterns in the sky that look like they’re not even real, the way they’re changing constantly — people have been seeing those patterns since people were on the planet,” she said. “But only recently have scientists started to ask the question, how do they do that? How are the birds communicating so that it seems like they’re all following a blueprint?”[1]

Glotzer specializes in the way inert shapes can naturally align to create surprisingly complex patterns.

For example, if you have a room full of spheres, all the same size, they will naturally assemble into a simple lattice pattern. You only need to shake them gently and they will fall into this simple repeating pattern. What Glotzer discovered is that if you start with other shapes, such as pyramids, made from triangles on all sides, they produce quasi-crystalline patterns that never repeat. Simple shapes can produce surprisingly complex patterns.

Glotzer sees this as a potential new insight into the origin of life. She said:

Most scientists think that to have order you need chemical bonds — you need interactions. And we’ve shown that you don’t. You can just have objects that, if you just confine them enough, can self-organize… So it’s a completely different way to think about life and increasing complexity… I know because I’ve done this, that I can take a bunch of objects and put them in a little droplet and shrink the droplet a little, and these objects will spontaneously organize. So maybe that phenomenon is important in the origin of life, and I don’t think that’s been considered.

This insight about the patterns created by different shapes is valuable for the work that Glotzer does: creating new materials through molecular engineering. Unfortunately, it isn’t going to helps us solve the mystery of the origin of life because it displays the wrong kind of complexity.

This simple mistake happens far too often. It is time to kill this fallacy.

The reason that even smart scientists fall for this error is that they really don’t understand organic life. They can’t explain how even the simplest cells survive. Physics and chemistry don’t give us the tools needed to illuminate the secret of life.

What happens when we face something unknown, something we don’t understand? We naturally compare it to things that we know. That is why scientists keep trying to see if mechanical reactions can explain life.

Unfortunately, this doesn’t help, for a simple reason: Life is complicated in a special way that machines can’t achieve. Once you see this, you will realize why all of the games with computer algorithms, looking for ways to create complexity, are a waste of time.

To understand this, let’s start with one of the best introductions to this problem and how it relates to the origin of life. In Richard Dawkin’s book, “The Blind Watchmaker,” he asks:

So, what is a complex thing? How should we recognize it? In what sense is it true to say that a watch or an airliner or an earwig or a person is complex, but the moon is simple?[2]

Dawkins takes us down this path to show that we have to throw away many of the simplest ideas about complexity if we want to get at what really matters. For example, the moon is simple because it is one homogeneous thing, like a bowl of milk or the endless sands in the Sahara desert. Dawkins suggests that we need a system with many different elements. That is the kind of complication we are looking for.

However, this isn’t enough. A mountain, like Mont Blanc, is made up of many different types of rocks. And every area of Mont Blanc is truly unique and distinct from every other, making it far from simple. But this doesn’t resemble the patterns we find in organisms.

Mont Blanc, the highest mountain in the Alps. Photo from Wikipedia.

He then asks if we can get closer to the mystery of life by looking at probabilities. What if we say something is complex only if it has an arrangement of many different elements in a way that is highly improbable?

[I]f you take the parts of an airliner and jumble them up at random, the likelihood that you would happen to assemble a working Boeing is vanishingly small. There are billions of possible ways of putting together the bits of an airliner, and only one, or very few, of them would actually be an airliner. There are even more ways of putting together the scrambled parts of a human.

This approach to a definition of complexity is promising, but something more is still needed. There are billions of ways of throwing together the bits of Mont Blanc, it might be said, and only one of them is Mont Blanc. So what is it that makes the airliner and the human complicated, if Mont Blanc is simple?[3]

In other words, the complexity we are looking for can’t be found by just throwing things together. We need to see something more than just an accumulation of parts.

This shows why Glotzer’s discovery is not going to help. She researches the results of tossing things together. Yes, they can make amazing patterns that never repeat, which are fascinating, but it is still just a pile of parts. By itself, this pile doesn’t do anything special.

Therefore, it isn’t the improbability of a non-repeating pattern that we are looking for. We need something more. As Dawkins says:

If we see a plane in the air we can be sure that it was not assembled by randomly throwing scrap metal together…[4]

Intentional flight requires a different type of complexity. A plane allows people to travel around the world. That is what jumps out at us. Jets can’t be created by just throwing things together and hoping that something special is going to emerge.

But this is where I part ways with Richard Dawkins, because even this isn’t the kind of complexity we are looking for in living creatures. Why? Because planes are designed and constructed by human beings from a plan, from a blueprint. On the other hand, multicellular creatures, such as animals, fish, even trees and plants, develop from single cells, into complex bodies, made up of many organs that work intricately with each other. We don’t see the same thing in even the most sophisticated machines.

Can we explain the difference between the complexity of machines and organisms? Let’s look.

Planes don’t grow from seeds. That’s one difference. Here is another, plants and animals are not assembled by outsiders.

Airliners don’t seek for food or fuel on their own, while creatures are able to overcome incredible obstacles to find nutrition. Jets don’t develop unique ways of defending themselves from predators. And planes don’t reproduce by mating with other aircraft, or by dividing into two.

Organisms clearly show us a different kind of complexity than machines. Scientists keep trying to treat creatures as if they are sophisticated machines, but the metaphor fails in important ways. For example, biologists have been forced to abandon the old idea that DNA contains a blueprint for constructing the body of animals. It simply doesn’t work.

When DNA was first discovered, biologists expected to find one gene for every protein and enzyme needed in the human body. Once they mapped the whole genome, however, they found that there aren’t even close to enough genes to pull this off.

Every gene is involved in multiple roles. They also need to work with countless other genes. Many times, parts of one gene are used with parts from another, to get what is needed. And genes are turned on and off from outside the DNA.

Look at trees. They don’t follow a blueprint or a plan. That’s why the branches, leaves, and seeds emerge spontaneously at different places, making each tree unique. The blueprint idea simply doesn’t work as an explanation. This is one of the many failed attempts to compare living things to machines.

So we need to find a different kind of complexity than we see in machines. How do we describe this difference? Here is one way: You can’t take a creature apart to study how all of its organs and cells work together. If you try to do this, you will kill it.

That leads us to an even bigger difference: If a bird dies, it can no longer fly or search for food. Its body is just as complex as it was the moment before it died, but now it no longer hops on its feet, flaps its wings, or sings.

Robert Rosen’s description of complexity brings us closer to the mystery of life that we are searching for: A living organism is a system that cannot be fully explained by reducing it to its parts because it can only live when its parts work in a relationship with each other as a whole.

Rosen puts it this way:

It has turned out that, in order to be in a position to say what life is, we must spend a great deal of time in understanding what life is not. Thus, I will be spending a great deal of time with mechanisms and machines, ultimately to reject them, and replace them with something else. This is in fact the most radical step I shall take, because for the past three centuries, ideas of mechanism and machine have constituted the very essence of the adjective ‘scientific’; a rejection of them thus seems like a rejection of science itself.

But this turns out to be only a prejudice, and like all prejudices, it has disastrous consequences. In the present case, it makes the question ‘What is life?’ unanswerable; the initial presupposition that we are dealing with mechanism already excludes most of what we need to arrive at an answer. No amount of refinement or subtlety within the world of mechanism can avail; once we are in that world, what we need is already gone.[5]

This helps us see the enigma of life more clearly. This is the puzzle we need to solve. Now that we understand the mystery we are up against, it is easy to see why most discussions about complexity and the origin of life completely miss the point. Complex mechanisms and chemical reactions are not enough. Even random events won’t help because the puzzle we need to solve is to explain what makes living things alive.

No one has found a mixture of chemicals that alters its course, avoids threats, or replenishes itself. Chemical reactions simply stop when the energy driving them runs out. Then where does the remarkable desire for life come from?

A crystal, a candle flame, a hurricane, or a Bénard cell does not seek resources when the material conditions for continued catalysis runs out; they cease. Living things do so until all options are exhausted. Some of the simplest organisms engage in surprisingly elaborate behaviors to forestall cessation.[6]

How did a self-organizing, autocatalytic chemical system come to persist in such a way that it could be described as self-preserving…? We do not know. Moreover, we do not appear to be overly concerned that we do not know. The answer cannot be, it just did.[7]

One way to make this point even clearer is by distinguishing between “self-ordering” systems and the kind of organization that we see in living organisms, where cells and organs form responsive relationships, as they work with each other toward a common goal.

Self-ordering should not be confused with self-organization.[8]

A flame on a candle, the vortex that forms in tornados and hurricanes, and crystalline shapes are all examples of self-ordering. They are all the result of physical dynamics that can be explained with physics and chemistry.

No truly sophisticated function has ever arisen from self-ordered states.[9]

Living organizations are different. They require relationships between responsive life forms. For example, human beings work together for a common purpose. Cells and organs work together as a whole. And flocks of starlings fly together as a group. These types of living organizations can’t be explained by simple cause and effect mechanisms or principles of chemistry.

Swarm of starlings. Photo from Wikipedia.

What Glotzer is talking about is clearly self-ordering, not self-organizing. Glotzer’s work is fascinating, but there is no great mystery in the way objects self-order and arrange themselves. This isn’t going to help us solve the enigma of life. Even a well-planned blueprint isn’t enough.

Living organizations and living organisms have a special form of complexity that can never be fully understood by taking them apart.

[1] Natalie Wolchover quotes Sharon Glotzer, “A ‘Digital Alchemist’ Unravels the Mysteries of Complexity,” Quanta Magazine, March 8, 2017.

[2] Richard Dawkins, The Blind Watchmaker (New York: W. W. Norton & Company, 1986), p. 6.

[3] Richard Dawkins, The Blind Watchmaker (New York: W. W. Norton & Company, 1986), p. 7.

[4] Richard Dawkins, The Blind Watchmaker (New York: W. W. Norton & Company, 1986), p. 8.

[5] Robert Rosen, Life Itself: A Comprehensive Inquiry into the Nature, Origin, and Fabrication of Life (New York: Columbia University Press, 1991), p. xv-xvi.

[6] Lyon, “To Be or Not To Be: Where Is Self-Preservation in Evolutionary Theory?” Major Transitions, p. 106.

[7] Ibid., p. 122.

[8] Abel DL, Trevors JT. Self-Organization vs. Self-Ordering events in life-origin models. Physics of Life Reviews. 2006;3, page 211. Also available from http://lifeorigin.academia.edu/DrDavidLAbel.

[9] Abel, DL. Life Origin, A Scientific Approach, edited for the non-scientist. Available from http://lifeorigin.info/whats-the-difference-between-self-ordering-and-self-organizing.html – _ENREF_21

How Can Anything Be Half-Alive?

Posted on August 22, 2016 by Doug Marman

By Doug Marman and Alan Rayner

(This article has also been published on BestThinking.com: https://www.bestthinking.com/articles/science/biology_and_nature/genetics_and_molecular_biology/how-can-anything-be-half-alive-)

A new understanding of biology shows that life originates in a community and that individuality evolves when beings work together.

Cells that spawned all of life on our planet appear to have lived in hydrothermal vents. Image courtesy of NOAA.

Recently, we published a paper showing a new way of looking at the foundation of life: as a relationship between a lifeform and its habitat. If we use this lens, the origin of life suddenly makes a lot more sense.

Now here comes a new study that’s been reported in The NY Times, Smithsonian.com, The Christian Science Monitor, Independent and others, that identifies the genetic makeup of the cells from which all life on this planet descended. These mother cells are called the “Last Universal Common Ancestor” (LUCA). But the microbiologists who reported this news went on to say that it appears as if LUCA was only “half-alive.” How can anything be half-alive?

The scientists made this claim for a reason, because they see DNA as a building block of life. You see, a cell’s structure and function is dependent on proteins, and the genes in DNA guide the manufacturing of proteins. This allows a cell to build its own body. But LUCA was missing the genes needed to create crucial proteins. In other words, its genome was incomplete. So it appears that LUCA was dependent on its surroundings to supply the necessary materials.

Does this mean it was half-alive? No. All living things depend on their neighborhood, as we showed in our previous article. No lifeform is an island because life doesn’t belong to it alone. Living is a relationship—a continual give-and-take—between organisms and other living creatures in the world around them. This is why their bodies are porous and fluid. The expressions of other life forms nourish us, and the wastes and breaths we expel are food for others. Being alive is a shared experience.

The problem is that we don’t have a scientific explanation for what living is. And since we don’t understand how it works, we revert to old lenses. This is why many who study the origin of life look for cause-and-effect reactions learned from physics and chemistry, even though it’s clear that this approach falls short. Using the wrong lens, unfortunately, can also distort the picture.

Saying that LUCA was half-alive makes no sense. It’s like saying a woman with an unfertilized egg cell is half-pregnant and she becomes fully pregnant only when she gets the necessary ingredients from a sperm cell. That’s ridiculous. There is no such thing as being half-pregnant. There is no such thing as being half-alive. And there is no such thing as independent living because all creatures depend on others to thrive.

Complete independence would only be possible if a creature, by itself, created everything it needed to be alive. That’s impossible. Why? Because living means gathering and using energy, and nothing can create all of the energy it needs, by itself.

Where does energy come from? For life on Earth, our sun is the main source, but long ago the heat within our planet was also an important element. The molten core created deep sea ‘hydrothermal vents,’ and this is where LUCA appears to have survived.

However, this doesn’t tell us fundamentally where energy originates. To understand this, we can’t use the traditional physics that we learned from Isaac Newton, where external forces move lifeless matter. Instead, we must turn to quantum mechanics, which shows us that what physicists call ‘forces’ emerge from invisible, shared exchanges between ‘particles’.

Different types of relationships between particles lead to different types of energy.[1] For example, electricity and magnetism are the result of particles forming mutual one-on-one relationships with each other. Organisms display the same trait. Even we, as human beings, feel the power of attraction and repulsion when meeting people. We call it ‘chemistry’.

A second type of relationship leads to an attraction that pulls groups of particles to work together. The bodies of protons and neutrons are formed this way, when three quarks begin spinning as a unified group. And the bodies of atoms are held together by the attraction that emerges from the protons and neutrons that form the nucleus. Physicists call this the strong force. The same unification occurs with living things. We experience the added energy when people work together as a community. And the camaraderie we feel with co-workers is the same feeling of inclusiveness that pulls cells together to work as a body. This is why we see a relationship between living things and their habitats at the heart of every ecosystem.

Therefore, life is expressed through relationships.

All lifeforms live as members of a community. Painting by Alan Rayner.

This insight paints an inspiring new picture of how the first cells came into existence. There was never a time when ‘lone wolf’ bacteria lived in an empty, inert world because the world we live in is just as much alive with energy as we are. Our desire to live emerges from our relationships with a living environment. This means that the process of evolution is not something that happens to individuals—it is the community and their relationships that evolve.

Imagine being the only person in the world. You have no friends, family, or anyone to talk to. Would you ever want to develop a new business? Would you feel the need to learn how to read or write? Does it matter how much money you have?

Now think about what you look forward to when waking up in the morning. Isn’t your involvement with other living beings most important? Relationships are the medium of life.

Once we see that this is the essence of living, we have a new lens that reveals deeper truths behind the story of life.

For example, it helps us understand how life developed before genes existed. As we showed in our previous article, if you remove DNA from a cell, the cell will continue living for a while. It can’t reproduce, and it can’t replace or repair proteins, but it’s still alive. This proves that genes aren’t necessary for life to exist.

On the other hand, if you take DNA out of a cell—its habitat and home—it becomes a mere chemical compound. It doesn’t do anything special. In other words, DNA comes into life when it’s in the right ecosystem. If this is true, then this applies to all of the enzymes and proteins in a cell. That is why they respond to each other and the cell itself. They’re dynamic inhabitants of each other’s neighborhood and the shared space of the cell.

Where does the magic come from that pulls these molecules and atoms together to form a living organism? More than chemical actions and reactions are needed. A mutually inclusive relationship is required. This ‘quantum state’ is why cells work so closely together that they form our human bodies. It’s a natural phenomenon that emerges from group relationships when beings work for a common good.

According to quantum theory, these relationships can’t be explained by their individual components because they’re shared. When quantum particles become ‘entangled,’ an added dynamic exists between them that keeps them allied. This is why dissecting organisms will never show us how life works, because the shared exchanges in relationships are hidden from outsider eyes. Only those involved can feel the fluid cohesion aligning them.

We aren’t the source of our own life. We need oxygen, carbohydrates, fats, and proteins, all supplied primarily by photosynthetic bacteria and plants, in meat, fruit, and vegetables. Other life forms die for us to live, just as the death of our bodies is food for other organisms. How could human beings ever evolve if these other life forms didn’t evolve first?

Even today, life thrives near hydrothermal vents. Image courtesy of NOAA Okeanos Explorer Program.

Biologists are right to say that the first proto-cells—the cells that were not yet able to fashion all the proteins they needed to make their bodies—were dependent on the world around them. If a hydrothermal vent was the source, they were tethered to that vent. They weren’t free to roam elsewhere. Therefore, life was restricted before the necessary genes developed. But this doesn’t mean these proto-cells were half-alive. We have more mobility as human beings today, but we’re just as reliant on our ecosystem. We’ve simply replaced our dependence on a static source of power and materials for dependence on a dynamic neighborhood of cellular life.

This leads us to a question that has stumped biologists: What gave rise to life before cells began to reproduce? In other words, why did living things start creating progeny in the first place? If being alive is the only objective, then why would proto-cells give birth to children? It didn’t help them persist as individuals. In fact, reproduction is an energy-demanding process that requires life forms to expose themselves to risk rather than seal themselves off from the outside world.

Biologists often turn to Darwinism to explain the mysteries of biological life, but this can’t explain what happened before reproduction began and genes existed. Darwin’s theories offer no help in understanding the meaning of life.

But if we accept that life is a relationship between living things and their habitat, then we can see what’s missing from the puzzle: Reproduction develops stronger communities. Remember, proto-cells couldn’t survive on their own. They weren’t foolish enough to believe that they lived independently. They belonged within their neighborhood, like a tree is rooted within the earth.

In other words, they didn’t struggle to preserve their individual lives. They were participating in a shared adventure with others. That is the story of the origin of biological life on Earth.

No wonder they risked their lives and spent their hard-won energy and resources to produce offspring, because this was the only way they could sustain and build the community they were living in. Helping their community helped them blossom as well, strengthening the mutual relationship

Think of human experiences. Do you feel better when you lie, steal, and think only of your own desires? Or do you feel more empowered and healthier when contributing to a purpose larger than yourself? Psychologists have shown that working for families, friends, communities, and companies leads to psychological growth and maturity. Selfish individuals actually de-evolve. They regress psychologically.[2]

Biologists see the same thing. Parasites devolve. They lose genes over time, making them more and more dependent on their hosts.[3] Their lives get smaller. That’s the outcome of selfish living.

This all makes sense if living is a relationship between an organism and its habitat. The source of a creature’s life is the community it lives in, even for humans that are free to move around the planet. The more we work to make a healthier ecosystem—to enrich the world—the more we feel life-energy flowing through us. The reason is because energy flows through mutually inclusive relationships.

Therefore, the origin of cellular life needed more than a source of energy. It also required a place where communities of mutually dependent proto-cells could survive for long periods of time. Yes, they needed the right chemical elements, but they also needed other partial life forms, and they needed millions of years. Only then, as they co-evolved their community, could they start making the genes that would one day allow them to roam freely and spread across the globe. Stronger communities, working together, produced genes that would eventually give cells the freedom and ability to roam.

This reveals a fascinating insight: Individuality evolves when beings work together.

Hydrothermal vents create millions of tiny spaces just right for proto-cells. Reproduced with permission from Deborah S. Kelley and the Oceanography Society (Oceanography, Dec. 2007).

It turns out that deep sea hydrothermal vents were perfect environments for the origin of biological life, because they create millions of small cavities, just right for proto-cells to inhabit. Each cavity was a room with a built-in energy supply, as the warm chemistry flowed through it from the molten core. More importantly, the environment could protect a growing community of genetically incomplete cells. And these vents existed for millions of years.

So the process of life began long before LUCA. Communities grew and evolved gradually over millions of years before giving birth to organisms with mobility. Cellular life then eventually found a way of making their homes in virtually every nook and cranny, from the driest to wettest and coldest to hottest places on the planet.

The simplest expressions of living are in communities. This is and always has been the heart of life. This is why we grow as individuals when we work for the world we live in. We need our habitat and our habitat needs us. It’s a shared relationship—a quantum condition that is invisible to outside observers. We must be involved in this mutual exchange of life or we can’t live in this world. That’s why there is no such thing as being half-alive.

[1] Doug Marman, Lenses of Perception: A Surprising New Look at the Origin of Life, the Laws of Nature, and Our Universe (Washington: Lenses of Perception Press, 2016), p. 242-258.

[2] http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2743415/pdf/nihms115884.pdf

[3] Marman, Lenses of Perception, p. 376-378.

From The Nature of Business

Posted on August 3, 2016 by Doug Marman

What is life?? Let’s take a closer look shall we…
Once upon a time, not too long ago, I had the great pleasure of spending time with Dr Alan Rayner, a first rate scientist and former President of the British Mycological Society. Alan kindly contributed many insights to my book The Illusion of Separation, about how nature really works once we see beyond our acculturation.

This blog post is a guest post jointly written by Alan Rayner (author of NaturesScope) and Doug Marman (author of Lenses of Perception).

In March 2016, a group of biologists led by Craig Venter announced the creation of ‘independently’ living cells with the smallest genome. Their announcement was hailed as a milestone. The big lesson learned by the biologists is that no one can explain why almost one-third of the genes are needed for survival. However, hidden in the subtext of this study, we believe, is an even more important lesson: The most essential ingredient of life may not actually be genes or a substance of any kind, but rather a relationship.

Image of the new freely-living cells with the smallest genome. Image by: Tom Deerinck and Mark Ellisman of the National Center for Imaging and Microscopy Research at the University of California at San Diego.

In the experiment, the biologists started with bacteria that had the smallest genomes they could find. They then began deactivating genes one at a time, to see which ones were needed for survival. If the bacteria lived and kept reproducing, those genes weren’t necessary and were removed. After years of work, the genome was reduced to half its original size. Every remaining gene has been tested. None can be eliminated. Their goal is now to identify the role of the mystery genes. They hope this will give them a blueprint of what is needed for living cells to survive as independent entities.

But there’s more to the story. It turns out that many of the “unnecessary” genes could only be deleted after supplying the petri dish with key nutrients and eliminating potential dangers. As a result, the new cells can no longer survive in the wild because they’ve lost the ability to hunt for food and avoid threats.

Is it fair to say that these are independently living cells? Don’t they need the biologists to feed them and remove their wastes? This is where the story gets interesting.

[To read the rest of this post on The Nature of Business, go HERE.]

The Vital Question — Part I

Posted on May 6, 2016 by Doug Marman

By Doug Marman

Nick Lane recently published a new book, The Vital Question: Energy, Evolution, and the Origins of Complex Life. It isn’t an easy book to read, but it is packed with the latest research about the evolution of early life, and it offers a number of provocative new theories.

The Vital Question by Nick Lane.

Everything in Lane’s book fits perfectly with the theory of how life began that I presented in Lenses of Perception. However, Lenses fills in some important gaps in Lane’s story. That’s what I’ll be reviewing in this post.

Lane explains why we need to start looking at living organisms in a different way. The question we should be asking ourselves, he says, is not what is life, but how do creatures live? How do they extract energy from the world to keep them going? It’s an interesting perspective.

Lane then describes the process that all living things use to control energy. He even has a good story about where such a process probably began. But he can’t explain how living things gained the ability to intelligently control energy in the first place. This is where current science hits a wall. Fortunately, the Lenses of Perception theory shows a way to understand this missing key of life.

Lane’s book is filled with valuable insights. For example, out of date origin-of-life stories don’t work. The idea that lightning hitting the “primordial soup” (in the oceans) was able to create larger, more complex molecules, is a dead end. There is no way these molecules just arranged themselves into the right pattern and leaped the hurdle to life. Lane says the whole conjecture is misguided and should be forgotten.

The problem isn’t making complex molecules, he says. It is how to extract the energy needed to survive. Lightning can’t create the spark of life, because organisms need a continuous source of controllable energy to live. Lane believes the whole idea of the primordial soup is a big mistake that has led countless researchers in the wrong direction.

Lane then dives deep into describing how all life forms on Earth use energy:

“Essentially all living cells power themselves through the flow of protons… The energy we gain from burning food in respiration is used to pump protons across a membrane, forming a reservoir on one side of the membrane. The flow of protons back from this reservoir can be used to power work in the same way as a turbine in a hydroelectric dam… At the level of proteins, we now know how proton power works in detail. We also know that the use of proton gradients is universal across life on earth—proton power is as much an integral part of all life as the universal genetic code. Yet we know next to nothing about how or why this counterintuitive mechanism of energy harnessing first evolved.”[1]

In other words, even the simplest forms of life have a way of moving protons, one at a time, across a membrane, where they are stored like money in a bank. Later, they spend their proton loot to power everything they need to do, in order to survive. It’s an amazing discovery, but how exactly does the cell intelligently control this process? And how did the first life form learn this trick? Biologists don’t know.

That’s where the Lenses of Perception theory comes in. It proposes that the “all-for-one” bond is the secret of life we are looking for. This bond compels molecules of a cell to work in a coordinated way together for the cell’s survival. Outside forces can’t pull this off. The forces known to physics can’t make inorganic matter alive. Chemists and physicists haven’t found the right lens to see how this happens. But an understanding of relationships can explain it.

The process must start within the cell. The molecules must act in just the right way, to allow the cell to live. Why do they do this? According to Lenses of Perception, a special form of entanglement makes this possible.

The molecules in a cell are not only entangled with each other, forming a cohesive group, but they are also entangled with the cell itself. As a result, the molecules act as a team that is aligned to the cell.

This is admittedly a controversial theory, because most physicists believe that the unpredictable nature of quantum particles is, first of all, completely random, and second, it only happens at the subatomic level. Neither of these are true, however, since we see the same unpredictable behavior at the level of living cells, as well as at the level of complex organisms such as animals.

Lenses of Perception shows that the relationships between living creatures display all the same puzzles and paradoxes of quantum mechanics. This isn’t a coincidence. Fundamental particles are unpredictable because they, too, are conscious. This turns out to be a useful explanation because the spontaneous actions of quanta can’t be explained by outer forces.

If particles are conscious, then they should form relationships. This ends up being the true cause of attraction and repulsion between particles that creates the forces of physics. This might sound preposterous, but it’s completely consistent with quantum theory. (See Lenses of Perception for a detailed discussion.)

One type of relationship that forms naturally when beings come together is for them to work as a group. They form unified teams if they have good leaders. This bond, I believe, is the key to unlocking the secret of life. Once we realize the universal nature of what I call the “all-for-one bond,” we gain a new lens that shows us life in a completely different light.

For example, at the subatomic level, we see quarks coming together to form protons and neutrons. The units they form are so tightly bound together that they act as singular entities. They don’t spin like a group of quarks—they spin as one.

Protons and neutrons also bond together in the same way to form atoms. And this shows us one of the amazing results of this bond: It creates hierarchies. Not only do quarks combine to form protons, and protons combine to form atoms, but atoms also bind together to create stars, and stars form galaxies.

You might think that stars spin in galaxies only because of the force of gravity, but this is wrong. Scientists say that dark matter is needed to explain a strange problem: Why do the outer stars in galaxies spin as one? Gravity, alone, can’t explain this. The outer stars should spin slower, if only gravity is involved.

Unfortunately, physicists have no idea what dark matter is. And they don’t know why the outer sheath of the sun spins faster than it should, as well. Plus, a similar situation exists at the level of protons and atoms, called the “mass gap problem.” All of these problems are resolved, once we see the role of all-for-one bonds. (While I’m trying my best to make this understandable to newcomers, I can’t possibly cover all of the background in Lenses of Perception, so this is understandably a very quick summary.)

All-for-one bonds always create hierarchies because the group is held together by following a higher level leader. This is exactly why cells work together to allow complex organisms to live, and are even willing to sacrifice their lives for the sake of the creature. We see the same thing on a human level, when parents make sacrifices for their family, and when people come together to work for a company or a cause larger than themselves.

If this theory is right, then it paints a new picture of how cells first formed. In fact, the LoP theory is quite specific about how this must have happened. It had to start with a group that formed behind a leader who was one of their own. In other words, one molecule stepped forward to lead, but this role was temporary.

Any leader that steps forward from a group can be replaced. Actually, the members of the group can be replaced as well. This is exactly what we see in companies. They might get started with an entrepreneur, but other leaders take over as they expand, and employees come and go.

This first step is called a weak all-for-one bond, according to Lenses of Perception. The group isn’t held together as tightly as a cell, an atom, or an organism. In fact, weak all-for-one bonds can easily split into separate groups that go off in different directions. This is exactly what we see with companies. It also shows that reproduction probably existed before the first true cells emerged.

But weak all-for-one bonds have one big advantage over strong all-for-one bonds: They can survive indefinitely, as long as individuals continue stepping in to keep them going. That’s not true with organisms. When an animal dies, the cells that form its body all fall apart and decompose. This shows how closely their lives are entangled.

So, the first stage in the emergence of life is a loosely formed group that follows a temporary leader. A major evolutionary leap was needed to transform this group into a cell with a will of its own, creating a strong all-for-one bond. But I’m not going to discuss that stage in this post. I’ll address it in Part II.

Back to the pre-cellular stage. It probably survived for a long time, replacing leaders and members, before making the leap to becoming a unified conscious cell. In other words, it started as a community of molecules, and it must have taken a long time to evolve the ability to keep the group going. How did this happen? you might ask.

Hydrothermal vents deep under the ocean, near the Marianas Trench. Photo by the US National Oceanic and Atmospheric Administration.

Let’s turn back to Nick Lane. He tells an interesting story. Deep in the oceans on Earth are alkaline hydrothermal vents that offered exactly the right conditions for this process to begin. The vents are porous, with millions of tiny openings, making a perfect gathering place for molecules to settle and combine. The vents also supply a continuous flow of charged ions, while the rest of the ocean was much more acidic in those early days.

This allowed molecules to gather in the porous openings, creating something similar to membranes. And the vents supplied a natural source of protons, in the form of hydrogen ions, making a reservoir on one side. This created an electrical potential compared to the acidic ocean on the other side of the membrane. Therefore, there was a steady flow of energy that lasted for hundreds of millions of years. This is how long it took for a community of molecules to develop the ability to survive as a group.

This picture that Lane paints is consistent with the origin of life story in Lenses of Perception. It does seem like a realistic place for life to emerge. However, I don’t see how molecules could have evolved the ability to act as a group for its own self-preservation without the all-for-one bond. It can’t be created by external forces. That’s impossible. How could outside forces give creatures a will of their own? It must, by definition, come from within. This means that molecules must have first learned to keep the group going. Then the leap to cellular life was possible.

If consciousness exists first, and all particles possess it, then groups should naturally form, and the way they relate to each other should develop. In other words, they will gradually begin working as groups. That’s where molecules come from. But their abilities are very limited.

However, when molecules work together, they have far more flexibility (degrees of freedom). With a continuous source of energy and hundreds of millions of years, they could have learned how to work to preserve the life of the group, to keep the community alive. This makes sense if particles and molecules have some element of consciousness. And alkaline hydrothermal vents offer exactly the right environment, as Lane says.

The gaps in Lane’s story are where the Lenses of Perception theory shines. For example, he admits that he can’t explain how the first cells formed, or why molecules joined together to form genes:

“I was evasive on details such as how the genetic code arose, but focused on the conceptual argument that these conditions could theoretically have produced rudimentary cells with genes and proteins.”[2]

Unfortunately, when he tries to explain how this happened, he makes a common mistake. He says:

“Populations of cells were subject to perfectly normal natural selection.”[3]

Natural selection isn’t some kind of magic wand that we should wave to explain the things we don’t understand. Unfortunately, biologists do it all this time.

This doesn’t mean that natural selection isn’t real, but that we shouldn’t use it to paint over the things that we don’t know. Doing so stops us from looking for real explanations.

In this case, it is a serious mistake because natural selection doesn’t work with molecules. Chemical reactions, by themselves, can and do adapt to their surroundings, but they can’t evolve the ability to work together for the purpose of helping their group survive. It’s only wishful thinking to imagine that natural selection could magically pull this off. Something is clearly missing.

How did the first molecules gain the ability to work together as groups? Until we can answer this, we have no idea how genes first formed. Yes, we can see that genes play an important role in life, but what holds them together? How do they act at exactly the right times in synchrony with all the other genes to allow organisms to find food, excrete wastes, and reproduce?

Everything starts to make sense if consciousness is involved from the start. Then molecules will form relationships and groups. Over a billion years, it is possible for more complex combinations to form that allow individual molecules to work as a team, creating something that is larger than any of them individually. Once they experience the benefits, they will want to preserve the group by acting in a unified way.

Here’s another example of a big gap. In Chapter 3 of his book, Lane asks the question, why are proton gradients the source of power for all living things on this planet. Why not thermal or mechanical energy? Why not electrical discharges or ultraviolet radiation?

This deep sea hydrothermal vent is encrusted with tiny crabs and surrounded by life, which is a good sign that this is where life may have begun on planet Earth. Photo from Wikipedia by A. D. Rogers et al.

He goes on to suggest that the reason for this is that life began in these alkaline hydrothermal vents in the ocean. But this misses the real answer.

Thermal and mechanical energy, electrical discharges, and ultraviolet radiation, will never work because these are all classical forces based on cause and effect. Those forces only work at the level of masses of particles, not individuals.

We need a quantum process. We need to understand how forces themselves emerge from quantum fields and quantum interactions. That’s where the secret of life can be explained.

Mechanical and electrical forces all play roles in the lives of cells, but they will never explain how organisms act under their own volition or how they act to preserve their own lives. We need consciousness to begin with. Consciousness isn’t a byproduct, it is a necessary cause.

This becomes clear when we look at exactly how living things use proton gradients to power their lifestyles. Lane compares the flow of protons through the molecular structures in cells to shielded wires carrying flows of electricity. But this is wrong. A wire is one long conductor, with atoms lined up end-to-end. Electricity does indeed flow through copper like water through a pipe. Just add a voltage potential, such as a battery, and the current will flow.

This is not even close to what happens in cells. Lane shows this quite clearly. Proton gradients are constructed from 45 proteins, with each protein being made of hundreds of amino acids. This complex structure is needed for cells to move protons across a membrane and then use those protons to create the chemical energy needed to survive.

The protons are moved from one end of this chain to the other. Protons are moved one at a time through the structure, across a series of these landing spots. Each step is a carefully controlled distance from the next, because electrons must make quantum leaps to get from one to the next. In other words, protons are not moved like water or electricity. They’re moved one at a time through the structure with a quantum process guiding them.

A better analogy to what is happening here would be workers in a town, where farmers grow food, food preparers convert the food into usable forms, and movers bring the food to stores and restaurants where consumers can buy them. These consumers are the very same workers, food preparers, and movers. We have a functioning community.

We can’t just connect a battery to a circuit and make a town work. Food doesn’t flow through a pipe. It is passed along from one person to the next. It isn’t forced through the pipe by an external force. Yes, there is an exchange of money each step of the way, but it is the hunger of people that drives the process.

Money is not the cause. Cash flows through a town because there’s a need for food and other goods. In a cell, protons are the goods needed. Electrons are the money.

As electrons jump from one landing pad to the next, protons are handed off and routed to where they are needed.

This is a community effort. Everyone must work together to pull this off. In other words, all of the individual molecules must be aligned to a purpose, guided by common goals, and led by leaders to keep everything coordinated. These are relationships that make this work. Individuals helping each other and the group.

It seems hard to believe that molecules could act intelligently. I admit it. We’ve learned to look at matter as lifeless for so long that it is hard to buy this. But, as difficult as this is to picture, it does explain everything from the origin of particles to the origin of life. And after you get used to the idea, it makes sense.

There are no other solutions to the origin of life without huge gaps. Unless you want to believe that natural selection magically solved the problem, or that electrical currents somehow drive protons exactly to where and when they are needed for cells to survive.

In Part II, of this two-part series, we’ll explore a leap in evolution that is just as amazing as the origin of cellular life. This is the jump that cells took when they changed from being single cells to multicellular creatures such as plants, fungi, animals, and insects. In other words, all of complex life depends on this event when cells changed.

[1] Nick Lane, The Vital Question: Energy, Evolution, and the Origins of Complex Life (New York City, W. W. Norton & Company, 2015), p. 13.

[2] Nick Lane, The Vital Question, p. 149.

[3] Ibid.

Lenses of Perception

Posted on March 2, 2016 by Doug Marman

A Surprising New Look at the Origin of Life, the Laws of Nature, and Our Universe

By Doug Marman

“An important work for scientists who have suspected consciousness and subjective perceptions are fundamental to the universe and not some accidental epi-phenomenon. Marman’s work brings first-, second-, and third-person points of view into the fabric of the universe. The reader will never look at the world the same.”

Michael Clarage, PhD, Physicist

How did the universe come into existence out of nothing? Why is biological life irreducible? What are the deeper principles that create the laws of nature?

Lenses of Perception reads like a detective novel, as it dives into the foundations of physical reality and discovers the surprising role of consciousness. The evidence comes from experiments run by leading scientists.

Our scientific way of looking at the world as outsiders was pioneered by Isaac Newton. This third-person “lens of perception” allows us to objectively analyze forces with incredible precision. It ushered in our age of technology. But the limitations of this lens are clear.

It can’t explain the paradoxes of quantum mechanics or figure out how life began. It doesn’t even see consciousness, since awareness is invisible to outsiders. This is why physicists have been struggling with the same problems for more than forty years. Some call it a crisis. Many believe something big is missing.

Lenses of Perception offers promising solutions to “The Five Unsolved Problems of Physics” and new insights into how our mind controls our body—a puzzle that has baffled scientists and philosophers for hundreds of years. You will also see explanations for the biggest leaps in evolution, such as the origin of life and multicellular creatures.

These mysteries can all be explained using the same tools. Not with theoretical concepts, but through three simple fundamental ways of seeing.

ISBN 978-0-9793260-3-5 / 512 pages / $19.90

Click link above to Buy Now from our website.

Or click image below to buy from Amazon.

EXCERPT FROM LENSES OF PERCEPTION:

INTRODUCTION

What are lenses of perception? Simply put, they’re ways of seeing. We change lenses when looking at the world in different ways. Seems simple enough. We all do it, partially, when we relate to another person, dive into the artificial reality of a movie, or think outside the box.

However, if we want to be more than just a tourist and truly understand how life looks through a different lens, we need to first let go of everything holding us to our old worldview. Then we must pass through a zone of confusion and bewilderment. We feel lost until another lens makes sense. Only then can we fully adjust to a new perspective. Who wants to go that far?

This is why breakdowns in communication are so common. Without a strong desire to understand, other points of view seem wrong and confused.

Thus, in our age of specialists, we’re more like ships passing in the night. We rarely realize how different our perspectives are. It’s easy to write everyone else off as fools. The problem is that we look just as foolish to them.

More importantly, learning to switch lenses is a vital necessity in a society changing as fast as ours. It’s the only way our inner selves can adapt and keep up. If we avoid the path of wisdom and understanding and focus only on objective knowledge, modern culture soon seems alien and wrong to us. We see ourselves as outsiders and feel disconnected. Adjusting our lenses of perception allows us to connect at a deeper level, where we can see that things do make sense.

Here’s an example: The first major earthquake I experienced registered 5.4 on the Richter scale. It was powerful enough to make the ground beneath the San Francisco Bay area move in long undulating waves, as if it were fluid. The illusion of solidity vanished. I felt more like a surfer than someone standing on firm land. My sense of location disappeared as the earth itself flowed beneath my feet.

People around me screamed and froze, not knowing what to do. Others ran outside. However, a few old-timers smiled and calmly walked to the door. One of them said, “It’s nice to feel one once in a while.”

They’d been through the experience before. They knew what earthquakes feel like, so it didn’t shake them to their core. They retained a sense of orientation because they learned another way of seeing.

We don’t like changing lenses. Most of us fight tooth and nail to avoid the feeling of nausea that comes from a new mindset.

We build up our defenses to hang onto our picture of the world, whether philosophical, religious, or scientific.

If we can pry our fingernails free from our precious perspectives and let go of our death grip, we can discover new perceptions we’ve never seen before. These experiences alter our understanding in deep ways. They shine new lights on who we are.

Shifting perspectives not only broadens our understanding of other cultures; it also allows us to peer deeper into nature, solving mysteries that science has pondered for hundreds of years. When I first sat down to write this book, I had no answers to the questions of quantum physics. I didn’t know what was missing from Newton’s laws of motion. I sensed that the theory of evolution was incomplete, but I didn’t know why. I had no explanation for the mind-body problem or the scientific enigma known as “emergence.” The five unsolved problems of physics seemed inscrutable.

I only knew from experience that, when I changed lenses, I found an added level of comprehension. I learned this after making a practice of switching points of view, as an experiment, to explore the nature of consciousness. This doesn’t mean that a new perspective, by itself, gives us better insight. No, it’s the contrast. Seeing from another angle adds context.

While writing this book, I soon realized that I’d underestimated the importance of this simple tool of changing points of view. It’s far more powerful than I realized.

It not only offers the key to seeing in the dark, you might say, and getting to know realms that are new and unknown to us, it also restores our sense of wholeness to life. It bridges the gap between science, philosophy, the arts, and the spiritual experience of being. This is what happens when we connect with nature at a deeper level.

However, explaining lenses of perception isn’t easy. It’s hard wrapping our brains around the impact they have on us. Reading about them isn’t enough to see how deeply they affect our connection with the world. If we want to understand—to truly understand—we need to experience changes in our way of seeing firsthand. That’s what this book attempts to do.

Successful writers know the importance of “showing” rather than “telling.” A good story pulls us into a world where the scene unfolds as if we were there. Telling gives us only a clinical, literal description; it doesn’t move us to a new perspective.

So, to explain lenses of perception properly, I’ll be using words poetically at times to evoke new views of the world, even when talking about science. This is how we can find what is hidden in plain sight.

But words can’t pull this off alone. The reader must do some heavy lifting. This book is more like a tour guide. We are, in a sense, going on a jungle safari to explore untamed points of view. Hopefully your mind will be boggled. That’s the point of this journey.

I’ll start with familiar views of the world. At first you can retain your normal way of seeing and thinking. Yet the quest soon takes us into dense underbrush where the most valuable treasures are hidden. If we want to unearth the gold, we must let go of the way we usually see reality.

That’s where we discover that lenses of perception are not just tools that help us understand the world, they’re fundamental to reality itself. We’ll see the scientific evidence that supports this.

To make such a leap requires a completely different mindset. It will probably feel unsettling at times when the ground starts shifting. New perspectives can shake us to our core. This is true for everyone. I experience the same thing.

If a section of this book leaves you feeling disturbed, even if in a subtle way, try setting it down for a while. Give the ideas a chance to percolate. Then go back and read the section again. You might be surprised. Remember, the goal here is to experience the uncomfortable feeling of confusion and then, breaking through that, to learn how we can change the way we see.

When writing this book, I didn’t expect to be pulled into questions about the laws of nature. I was simply trying to understand the problems of our modern times and see where the story led. Each chapter took me by surprise, as if the sails of my ship were being blown onto a new course by powerful winds. The thread of the story kept leading to deeper and deeper insights. I found myself farther from shore than expected, facing a whole new view of the world and the meaning of human understanding.

If you’re interested in a wild ride, buckle your seatbelt. Then join me on the path of discovery I took to find the dimension of life that scientists have been missing. We’ll use new tools to guide us: lenses of perception.

Click to download a longer excerpt